1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaaattggcttgtattccacattgtcctctttgtatggagttcagatgatgtgcttcggatttttagtttttcaacctattattgatactagtacaattcccttttctaatggggcgtgtcaattccatagttaatgttattcttgtggctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAATCATTCGAGAACGGGATAGTTTGCACATTGCGTTGGAAGAGGAACGGC
species | Physcomitrella patens |
transcript | PP1S427_2V6.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|37824994|gb|BJ583060.1|BJ583060
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|162199020|gb|FC372371.1|FC372371
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|162154935|gb|FC331977.1|FC331977
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|161979267|gb|EE296320.1|EE296320
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|162183628|gb|FC359882.1|FC359882
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|162158726|gb|FC335574.1|FC335574
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAEST: gi|162242567|gb|FC414971.1|FC414971
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
EST: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAG CTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
genomic: AACAGAGTCTGATGTTTGAAATTGAACGTAATCGCAAATTAGAGGCTCAGgtaaattggc ... gctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAA
tttctaatggggcgtgtcaattccatagttaatgttattcttgtggctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAATCATTCGAGAACGGGATAGTTTGCACATTGCGTTGGAAGAGGAACGGC
atagttaatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattggcttgtattccacattgtcctctttgtatggagttcagatgatgtgcttcggatttttagtttttcaacctattattgatactagtacaattcccttttctaatggggcgtgtcaattccatagttaatgttattcttgtggctagagcagCTTCTAGATTTGGAGCAACAACAGGCGGTTTACAGGCGCAATCTAGAGAAAATCATTCGAGAACGGGATAGTTTGCACATTGCGTTGGAAGAGGAACGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA