1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtcataccacttctgaaccatccctcggtctgtttacaactttcttctgtcaatcatgtgttaggtgcctgacaagctatcttggattctcatgcttgtcttatgttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAGCACGTCGAAAACGACGGAGTTGGCGACTGAGTTCTTGGATTACTCCCCT
species | Physcomitrella patens |
transcript | PP1S427_25V6.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAG TGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAGEST: gi|19787500|gb|BQ040633.1|BQ040633
genomic: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAGgtcataccac ... gttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAG
EST: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAG TGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAGEST: gi|7287070|gb|AW599557.1|AW599557
genomic: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAGgtcataccac ... gttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAG
EST: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAG TGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAGEST: gi|162266085|gb|FC442770.1|FC442770
genomic: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAGgtcataccac ... gttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAG
EST: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAG TGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAG
genomic: AGCTCTTTGCGATGCTGTGAGATTGCCGGAGATTTGATCATCGCTGGAAGgtcataccac ... gttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAG
gttaggtgcctgacaagctatcttggattctcatgcttgtcttatgttgctgcagTGCGGATGGATCTTTGTTTTTCTGGCCACATATCTTTCCTTCCAGTGGTAGCACGTCGAAAACGACGGAGTTGGCGACTGAGTTCTTGGATTACTCCCCT
gcctgac putative branch site (score: 3)
ttatgtt TA-rich tract