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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caccgtcttaagagttgtctggcatgaatgtttccgctcaaaggacgattgcatattttttacagcattccaatagctgattacttctttctctttgcagGCGCAGTTATTGTCTTTGTTATGCCTAGGGGAAATAGGAAGGAGAAGGGACCTGAGTAGCCACTCCAACATAGAAGGGGTCGTGATTAGATCTTTTCAGT

Basic information

species Physcomitrella patens
transcript PP1S35_209V6.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163409|gb|FC339735.1|FC339735
EST:     CTGTGAGCATGTTGTTGACCACTTTAAGGTCGAGCGATGGAACGGATGCA                         GCGCAGTTATTGTCTTTGTTATGCCTAGGGGAAATAGGAAGGAGAAGGGAC
genomic: CTGTGAGCATGTTGTTGACCACTTTAAGGTCGAGCGATGGAACGGATGCAgtaagtttta ... ctctttgcagGCGCAGTTATTGTCTTTGTTATGCCTAGGGGAAATAGGAAGGAGAAGGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgattgcatattttttacagcattccaatagctgattacttctttctctttgcagGCGCAGTTATTGTCTTTGTTATGCCTAGGGGAAATAGGAAGGAGAAGGGACCTGAGTAGCCACTCCAACATAGAAGGGGTCGTGATTAGATCTTTTCAGT
                             agctgat  putative branch site (score: 4)
                                   ttacttctttctcttt  CT-rich tract
       atattttttaca  TA-rich tract