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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgggctttttttatttgaccggaattgttgtgaatgtatttaggtcattgtttgtttgaattattagtgcttgagagttagtagtcttgtgaatttcggtctttcgatccttaccttcttgttttcgattgtttattttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG

Basic information

species Physcomitrella patens
transcript PP1S2_217V6.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256773|gb|FC432667.1|FC432667
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162178087|gb|FC354389.1|FC354389
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162167759|gb|FC344073.1|FC344073
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162174994|gb|FC350893.1|FC350893
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162174995|gb|FC350894.1|FC350894
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162191638|gb|FC367683.1|FC367683
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
EST: gi|162178086|gb|FC354388.1|FC354388
EST:     CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAG                         GCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC
genomic: CAGAGACATTGGAGCCTAGTTTGCAGTTAGCAGCTGCTATTCTTGCTCAGgttcgggctt ... tttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcggtctttcgatccttaccttcttgttttcgattgtttattttgtcaaagGCTAAATTACCAGCATCAGAGATCGCTGCGGCAATTGACCAGTTCCGAACCAATCATCTCTCAGAACTCACAGAG
                tccttac  putative branch site (score: 2)
                                        tttatttt  putative PPT
                                    attgtttattttgt  TA-rich tract