1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtactttttgcttccgtcatattttgtttgacatgcatttttatccgatttgtgtgtgttgagtagtaaaccttctcatcggatgctgtgttcgtatttttcaattgaagtttgggatgcatcttctagatgtccttcattcgcctttcacagcaatgtggatctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAGCACGAAGGAATTTTTGGTACCTGGTATTGCAAAGTTATAGATGCATTT
species | Physcomitrella patens |
transcript | PP1S468_8V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|18333931|gb|BJ165947.1|BJ165947
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|37836827|gb|BJ594835.1|BJ594835
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|6167275|gb|AW145539.1|AW145539
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|162256591|gb|FC432901.1|FC432901
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|18340476|gb|BJ172504.1|BJ172504
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: TTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|162154254|gb|FC330385.1|FC330385
genomic: TTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|37823143|gb|BJ581209.1|BJ581209
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|37833482|gb|BJ591494.1|BJ591494
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAEST: gi|162260782|gb|FC438138.1|FC438138
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
EST: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGG AAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
genomic: AAGTTGTAATTGGTTCCACGAATATTGATGATCCACATCAGTTCATCCGGgtactttttg ... ctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttgcttccgtcatattttgtttgacatgcatttttatccgatttgtgtgtgttgagtagtaaaccttctcatcggatgctgtgttcgtatttttcaattgaagtttgggatgcatcttctagatgtccttcattcgcctttcacagcaatgtggatctggttgcagAAAATGAAGAACTTGGGCAAATTAGAGATGGACGACTTTTGATGTGAAGGAGCACGAAGGAATTTTTGGTACCTGGTATTGCAAAGTTATAGATGCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG