1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...actagaatgcccctcaagacagaaccgtgaaccttttagatccgagtaatttttttgttctttcttatatattaacgtcttatactgtggtgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATCTTGACTGCGCTGCGATCGTTAGCCAATGACCGAACTTCTATCTTTATC
species | Physcomitrella patens |
transcript | PP1S249_41V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AGCTCGAGCTTTTCTAAAAGCATCACCTTTATT GCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATEST: gi|162264793|gb|FC440360.1|FC440360
genomic: AGCTCGAGCTTTTCTAAAAGCATCACCTTTATTgtgagttctc ... tgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
EST: GTTGCTCTANNGCTCGAGCTTTTCTAAAAGCATCACCTTTATT GCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATEST: gi|162264792|gb|FC440359.1|FC440359
genomic: GTTGCTCTA--GCTCGAGCTTTTCTAAAAGCATCACCTTTATTgtgagttctc ... tgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
EST: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATT GCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATEST: gi|162165440|gb|FC340876.1|FC340876
genomic: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATTgtgagttctc ... tgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
EST: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATT GCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATEST: gi|162166194|gb|FC343424.1|FC343424
genomic: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATTgtgagttctc ... tgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
EST: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATT GCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
genomic: AAACAGCGTGTTGCTCTAGCTCGAGCTTTTCTAAAAGCATCACCTTTATTgtgagttctc ... tgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGAT
gtaatttttttgttctttcttatatattaacgtcttatactgtggtgtatggaagGCTTTGTGATGAGGCAACAAGTGCACTTGACAGTTCAACTGAGGGAGAGATCTTGACTGCGCTGCGATCGTTAGCCAATGACCGAACTTCTATCTTTATC
tattaac putative branch site (score: 5)
ttttttgttctttctt TA-rich tract