1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtacccctattcgtactcctctctgttgtgtactcattcaatcaatctctggttgtgctctttacacgtcgtttttgccataatttatgattcaataatatgttgctctgacggttttctaatttggagcttcttgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG
species | Physcomitrella patens |
transcript | PP1S243_63V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162168671|gb|FC343933.1|FC343933
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162248787|gb|FC422014.1|FC422014
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162168672|gb|FC343934.1|FC343934
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162174016|gb|FC350531.1|FC350531
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162248786|gb|FC422013.1|FC422013
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: GCTT-GAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAEST: gi|162149694|gb|FC326745.1|FC326745
genomic: GCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
EST: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAG TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
genomic: CTCTTTCTGCTTGGAAAAGTAGAAGACTGTGTACAATTATTGATTGACAGgtacccctat ... tgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGA
attcaataatatgttgctctgacggttttctaatttggagcttcttgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG
ttctaat putative branch site (score: 1)
cttcttgt putative PPT
ttttctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacccctattcgtactcctctctgttgtgtactcattcaatcaatctctggttgtgctctttacacgtcgtttttgccataatttatgattcaataatatgttgctctgacggttttctaatttggagcttcttgtggtacagTAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG