1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagctatttaggtcccagtaactcgtttgactaagtgacttcttttgtagggacccttcatcattcttacttcacggtgttgtgcagTTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACTGTCAATGAATTTGTTAAGGACCTGAATGACGGTCAGTGTGAAAACGACC
species | Physcomitrella patens |
transcript | PP1S195_4V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AATGGTTGCAATATGCCAAGACCCGAAGTGCCCGACACAAGCTTACCAAG TTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACTEST: gi|162258721|gb|FC434520.1|FC434520
genomic: AATGGTTGCAATATGCCAAGACCCGAAGTGCCCGACACAAGCTTACCAAGgtaagctatt ... tgttgtgcagTTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACT
EST: AATGGTTGCAATATGCCAAGACCCGAAGTGCCCGACACAAGCTTACCAAG TTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACT
genomic: AATGGTTGCAATATGCCAAGACCCGAAGTGCCCGACACAAGCTTACCAAGgtaagctatt ... tgttgtgcagTTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACT
aagtgacttcttttgtagggacccttcatcattcttacttcacggtgttgtgcagTTTCTGAAGGAGCAAGCGGCACTATCTGCTGAAGAGATAACAGCAGACACTGTCAATGAATTTGTTAAGGACCTGAATGACGGTCAGTGTGAAAACGACC
ttcttac putative branch site (score: 9)
ttctttt TA-rich tract