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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgggttatactctagatttctcttctgttgtttccgtcttgaaagcaagatactgtcagaattttgcctgactgaagtttagcgtttctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGATGGCTTCCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATG

Basic information

species Physcomitrella patens
transcript PP1S9_356V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100362407|gb|BY947341.1|BY947341
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|100426953|gb|BY977447.1|BY977447
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|162194715|gb|FC371562.1|FC371562
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATCCTAACAGCAGTACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|100448276|gb|CJ972575.1|CJ972575
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|100447965|gb|CJ972264.1|CJ972264
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|162196933|gb|FC375184.1|FC375184
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATCCTAACAGCAGTACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|18350746|gb|BJ182797.1|BJ182797
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
EST: gi|100383772|gb|BY969301.1|BY969301
EST:     TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAG                         AATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT
genomic: TGGTCCGTGGTTGCTGAACGTAGAGATTCTAACAGCAGCACGATCTCGAGgtgtgcacgt ... ctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaagatactgtcagaattttgcctgactgaagtttagcgtttctgcttctagAATTGGTTTTCTCCCCCTCTAGGTCTCTCCGGCGATGGCGATGGCCCAGATGGCTTCCAAATTGGCACGGCGAGTAATGGGAACCGAGACGCCTGTCATG
                       gcctgac  putative branch site (score: 3)
                                          tttctgcttct  putative PPT
               agaatttt  TA-rich tract