1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaatacccagcgaacatgttgtcatcttcatgaagaagagccgggattcatagcttgttaatgttgtctgagtggtgggcacatagatgggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGATGAACAGGAGAAGGACATGTTGGACCATCTTTACTCTCTTCAATACCAC
species | Physcomitrella patens |
transcript | PP1S9_350V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAG GAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGAEST: gi|208355623|gb|DC929915.1|DC929915
genomic: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAGgtattcttgc ... ggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGA
EST: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAG GAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGAEST: gi|162242541|gb|FC414958.1|FC414958
genomic: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAGgtattcttgc ... ggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGA
EST: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAGATGGGCCACGCAGEST: gi|162158333|gb|FC334752.1|FC334752
genomic: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGA-T--T--G-G-T-----ACG-AGgtattcttgc ..
EST: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAG GAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGAEST: gi|67574869|gb|BJ947693.1|BJ947693
genomic: CGGTCCCCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGGTACGAGgtattcttgc ... ggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGA
EST: CCGATTAATGGTTTTCACGAATCACCGAGGCCGATTGATGGGCCACGCAG GAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCG
genomic: CCGATTAATGGTTTTCACGAATCACCGAGGCCGA-T--T-GG-TACG-AGgtattcttgc ... ggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCG
gattcatagcttgttaatgttgtctgagtggtgggcacatagatgggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGATGAACAGGAGAAGGACATGTTGGACCATCTTTACTCTCTTCAATACCAC
tgttaat putative branch site (score: 8)
ttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatacccagcgaacatgttgtcatcttcatgaagaagagccgggattcatagcttgttaatgttgtctgagtggtgggcacatagatgggccacgcagGAAGGTTGTGGAGCATGTTGTTTTGCTTCAGATGGAGGAGGACATGACCGATGAACAGGAGAAGGACATGTTGGACCATCTTTACTCTCTTCAATACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA