1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgcagcctgtatcttgaaactgtagattgagctcgaattcgaggatcgggacgcagaacagtttgatgatttcgagtttgtgatttggtttcagGGATGTGGACATTCCGTTGACGGAGAAGGGTGTGGAGGAGGCGCTGGCGGGCGGGAGAGCCGTAAGTGAGATTGACTTCGACATCATTTTCACAAGCCGA
species | Physcomitrella patens |
transcript | PP1S9_319V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG GGATGTGGACATTCCGTTGACGGAGAAGGGTGTGGAGGAGGCGCTGGCGGGEST: gi|100444429|gb|BY964127.1|BY964127
genomic: GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGGgtacgcagcc ... ttggtttcagGGATGTGGACATTCCGTTGACGGAGAAGGGTGTGGAGGAGGCGCTGGCGGG
EST: GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG GGATGTGGACATTCCGTTGACGGA
genomic: GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGGgtacgcagcc ... ttggtttcagGGATGTGGACATTCCGTTGACGGA
cgaggatcgggacgcagaacagtttgatgatttcgagtttgtgatttggtttcagGGATGTGGACATTCCGTTGACGGAGAAGGGTGTGGAGGAGGCGCTGGCGGGCGGGAGAGCCGTAAGTGAGATTGACTTCGACATCATTTTCACAAGCCGA
gtttgat putative branch site (score: 10)
atgattt TA-rich tract