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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT

Basic information

species Physcomitrella patens
transcript PP1S9_292V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os09g36830.1 (Oryza sativa), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgat-ggcgcgtgcaacgtttgtggggcgagagaggagggggtgac-ttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                                         ||  |||||| | | | |||  |  ||||        | |        |  | ||   ||    ||| |    ||  ||  |    ||  ||   |   ||||| || |||||| | |||||||||   ||||||||  |||| |||||||| ||||| |||||||| ||||||||||| || ||||||||| | || || |
------------------------------------------------------------------------tgctggatgattgtctcatgcttctgttgtatccatgtatattgttttttatcattcatgtacaaagtcgattagat-tcatgtgcatgtttgt--gtttcagGCTGCAAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACCGTGGCTGACATGATCAAGGGGAAGACACCAGAGGAGATCCGCAAGACCT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os11g26910.1 (Oryza sativa), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttgg----ggtgaggagttgtgctgacgtcggggtggtg-aatgatggga----acagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                                                  ||     || |    || || |||   |         |||  || |     ||||  | |  | || |   |  | |  |   ||  |   |    |||||| ||||||||| | |||||||||    |||||||| | || |||||||| || || |||||||| ||||||||||| || ||||||||| | || || |
----------------------------------------------------------------------------------tgaactatgtattccttttgtggctgaatgttgatctgtgctttagccatagtgattactgcttcttataccatgtttatttgattctcaaatcccacagGCCGCGAACTACCTCAACATCAAGGGGTTGCTGGACCTTACTTGCCAGACTGTTGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G032562_T01 (Zea mays), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                                  ||| |||  |   |  ||    |  ||   | | | | | |  | || |     |   |||  |       |||||       |  | |  || ||       |||||| ||  ||||| || | |||||    ||||||||| |||| |||||| | || ||||||||||| ||||||||||| || ||||||||  |  | || |
-----------------------------------------------------------------aggcagaattggtgtt-tgtattggccattatattttgagtgtca-agaaataaatatattgtaggattatattgtgactgt-ccatgctactgcattc-----acagGCTGCAGACTACCTGGAGATCAATGGGCTGCTGGACCTGACCTGCCAGGCCGTCGCGGACATGATCAAGGGGAAGACTCCAGAGGAGATACGCGAGACAT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA01G36850.2 (Glycine max), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                         |   |  ||       | || |||     |  ||| || | |     |  |   || |||        |    |  | | |  |||  | ||    |||   |||  |      |||| |||||||||||||||||||||| |||||||||| | || ||||| || || || |||||||| ||||||||||| || ||||| ||  | || || |
---------------------------------------------------------catggttggattatctgggcaatg-----gaatgccacatatactctgttaattagtagg--------ttaaatctgtactaatgc--atgttaatgtgac-aattttccttttagGCTGCGAACTACTTGAACATCAAGAGCCTGCTGGACCTTACATGCCAAACTGTAGCCGACATGATCAAGGGGAAGACTCCCGAGGAAATTCGCAAGACCT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G08440.1 (Glycine max), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagt-tgtgctgac----gtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                                           |     || |   |||||    |||    || | | |      | | | || |   |   ||| ||| || |      |    |||   |||  |      |||| || ||||||||||||||||||| |||||||||| | || || || || || || |||||||| ||||||||||| || ||||| ||  | || || |
-------------------------------------------------------------------------atgtttgtattgtttgtgca----ttgcaatgccacataaactctgtttatttagtaggttaagtctgtactaatacatattaatgtgac-aattttctttttagGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTTACATGTCAAACTGTAGCCGACATGATCAAGGGGAAGACTCCAGAGGAAATTCGCAAGACCT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA16G23230.1 (Glycine max), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcga-tgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                            | |    |  ||     |  ||   | |  ||||   ||| |      ||      |        ||    ||   | |    ||    ||    |     ||       |||||| || ||||||||||||||||||| |||  ||||| | || |||||||| || || |||||||| ||||| ||||| || ||||| ||  | || || |
-----------------------------------------------------------taaccattgtagacttttgtctgcctgtgtttgca-tatttttaatcttag------gtttactctttattatgtcaattaacactctt-tcaaaatttcctat-------acagGCTGCAAACTACTTGAACATCAAGAGCCTTTTGGACCTTACTTGCCAGACAGTAGCAGACATGATCAAGGGAAAGACTCCTGAGGAAATTCGCAAGACAT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                             |    |||| |        |||  |   |  |    || ||       ||  ||  |    | ||   |||     |||   | |  |  | ||  |  ||  |     |||||||| |||||  ||||||||||||  || |||||  | || || ||||| ||||| |||||||||||||| ||||| || ||||||||  | ||||| |
-------------------------------------------------------------gtcatggcgaacaattttagatatcatatcta----ttttgatataccagtagaaagaaaaatttacagtggt---ttgacataatttgtgtgtatttgatttt-----cagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDP05410 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccag-cgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                              |   || | ||| |  ||  || ||| | |   ||   ||     |   |     ||||   || ||    |||     |    | | | | ||| |     | | |    ||| |   ||  |                |||||| ||||||||| |||||||||||   ||||||||| |||| |||||||| |||||  | ||||| |||||||| ||||| ||||||||| | || ||||
------------------------------gtaagc-gcgcgagaaatttggagcacctcgttcgctcgcatggcccttagagccgcgcccccatcggccatggc-tatgcattgcgagcgagacgtctaacgcgcatgcatgcggctctcacgc------------aacacagGCTGCGAACTACCTGAACATCAAGGGTCTGCTGGACCTGACCTGCCAGACTGTGGCTCAGATGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ22022 (Selaginella moellendorffii), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatga-tggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                               | || |   | |   ||    |     | |  |   |  ||| |    ||||| |||| |  |||             || |  |||  |    |   |  |    |||  ||  |  |     ||||| ||||||||  | ||||||  |||| |||||||  |||||||||| || |||||||||||||| ||||| ||||| |||||||||||| | || || |
----------------------------------------------gtaggatttcttcgttcgatttcttcccccctttttctctcgcttttctcgttt-tgggtcttgagc-----------tttcgactgacaatcgatttgggtgatctggttttgcgttgttc---cagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

upper sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ18284 (Selaginella moellendorffii), 3'ss of exon 1
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatgg--cgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgt--gctgacgtcggggtggtgaatgatgggaac-agGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                                                                   |  | |   |   | | |    | | |  | ||| |    ||             |   || ||||   ||| | |   |||||    |  |  ||  ||||  |  | |||| ||||||||  | ||||||  |||| |||||||  |||||||||| || |||||||||||||| ||||| ||||| |||||||||||| | || || |
-------------------------------------------------------------------gtaggatttcttcgttcgatttcttcccccctttttctctcgctttt-------ctcgttttgggtcttgagctttcgactgacaatcgatt--tgggtgatttgttccagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162275756|gb|FC451927.1|FC451927
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18344973|gb|BJ177014.1|BJ177014
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162234412|gb|FC410158.1|FC410158
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37824176|gb|BJ582242.1|BJ582242
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|67702147|gb|BJ962380.1|BJ962380
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAAACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18359858|gb|BJ191919.1|BJ191919
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208381062|gb|DC903008.1|DC903008
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37853259|gb|BJ611267.1|BJ611267
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208348031|gb|DC905354.1|DC905354
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGGACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162166633|gb|FC343525.1|FC343525
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208348101|gb|DC916911.1|DC916911
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162232760|gb|FC408167.1|FC408167
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACGTGATCTTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37841631|gb|BJ599639.1|BJ599639
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18329723|gb|BJ161729.1|BJ161729
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCA
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCA
EST: gi|162169560|gb|FC346124.1|FC346124
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162250432|gb|FC426294.1|FC426294
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208381346|gb|DC919236.1|DC919236
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGGACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37844066|gb|BJ602074.1|BJ602074
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37837688|gb|BJ595696.1|BJ595696
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|67573099|gb|BJ945923.1|BJ945923
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162169559|gb|FC346123.1|FC346123
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGTTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162263247|gb|FC438548.1|FC438548
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37841902|gb|BJ599910.1|BJ599910
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18364626|gb|BJ196699.1|BJ196699
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGA
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGA
EST: gi|18367276|gb|BJ199358.1|BJ199358
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGA
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGA
EST: gi|162203202|gb|FC379299.1|FC379299
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18327116|gb|BJ159117.1|BJ159117
EST:     ACGCGGACTTTGTGAAGGTGGGCCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAA
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAA
EST: gi|162263246|gb|FC438547.1|FC438547
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|67720642|gb|BJ970901.1|BJ970901
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162252545|gb|FC427861.1|FC427861
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18364707|gb|BJ196780.1|BJ196780
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18335395|gb|BJ167414.1|BJ167414
EST:     ACGCGGACTTTGTGAAGGTGGGCCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162201394|gb|FC377120.1|FC377120
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18339836|gb|BJ171863.1|BJ171863
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|67696484|gb|BJ956717.1|BJ956717
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18363994|gb|BJ196067.1|BJ196067
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208395132|gb|DC923931.1|DC923931
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162250431|gb|FC426293.1|FC426293
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGTTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTCCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18358585|gb|BJ190644.1|BJ190644
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37847737|gb|BJ605745.1|BJ605745
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|208352869|gb|DC910088.1|DC910088
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162234413|gb|FC410159.1|FC410159
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|162275755|gb|FC451926.1|FC451926
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|18373568|gb|BJ205146.1|BJ205146
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCANACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
EST: gi|37841158|gb|BJ599166.1|BJ599166
EST:     ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTG                         GCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG
genomic: ACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 34

GGCGACGGATGACAAGCCCGCCGCTTCGGAGGACGACATCAAGGCGTGGGACGCGGACTTTGTGAAGGTGGACCAAGCTACGCTGTTCGACCTGATCCTGgtaagtgatg ... atgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT
                      tgctgac  putative branch site (score: 34)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA