1 5' 3' | 2 5' 3' |
...ctgtgttgaagaatttttttaatgtttctcacaccaaaacctaattaccactatacgtattataaagcggctaagcaatatcattgtgtgtttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGACACTGTAGAGGTTGTCATGGCCTTTGAAGAGGAATTTGCAATTGAGATCC
species | Physcomitrella patens |
transcript | PP1S9_288V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAG GTGACTCCCAATGCACACTTTCAAAACGATTTGGGACTCGACAGCTTGGACEST: gi|162240992|gb|FC416623.1|FC416623
genomic: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAGgtatcgtctc ... tttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
EST: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAG GTGACTCCCAATGCACACTTTCAAAACGATTTGGGACTCGACAGCTTGGACEST: gi|162240993|gb|FC416624.1|FC416624
genomic: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAGgtatcgtctc ... tttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
EST: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAG GTGACTCCCAATGCACACTTTCAAAACGATTTGGGACTCGACAGCTTGGACEST: gi|67704469|gb|BJ964702.1|BJ964702
genomic: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAGgtatcgtctc ... tttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
EST: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAG GTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGACEST: gi|162253430|gb|FC430064.1|FC430064
genomic: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAGgtatcgtctc ... tttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
EST: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAG GTGACTCCCAATGCACACTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
genomic: ACCGCGTTTTGAGTGTTGTCAAGAAAATGCAGAAAGTGGATAGCGCTAAGgtatcgtctc ... tttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGAC
taccactatacgtattataaagcggctaagcaatatcattgtgtgtttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGACACTGTAGAGGTTGTCATGGCCTTTGAAGAGGAATTTGCAATTGAGATCC
tatacgtattataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgttgaagaatttttttaatgtttctcacaccaaaacctaattaccactatacgtattataaagcggctaagcaatatcattgtgtgtttggaatagGTGACTCCCAATGCACATTTTCAAAACGATTTGGGACTCGACAGCTTGGACACTGTAGAGGTTGTCATGGCCTTTGAAGAGGAATTTGCAATTGAGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC