1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttaatgtatagaacagctatcctcttctgtgcaattacttgagtttttgtattgtagtgagactggcttggaattttatgcctgtgaatgtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCATTGAAGCGAGGCAAAGTTTCGCCTCGCTTGGAGGTTCCTAAGCACATT
species | Physcomitrella patens |
transcript | PP1S90_139V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|100372636|gb|BY948630.1|BY948630
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|67704267|gb|BJ964500.1|BJ964500
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|162209804|gb|FC385738.1|FC385738
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|162279385|gb|FC455932.1|FC455932
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|67575419|gb|BJ948243.1|BJ948243
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|100378011|gb|BY949635.1|BY949635
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|18349430|gb|BJ181479.1|BJ181479
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|100361031|gb|BY946879.1|BY946879
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|100378215|gb|BY949738.1|BY949738
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|18358319|gb|BJ190378.1|BJ190378
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGT-AGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCEST: gi|18367839|gb|BJ199922.1|BJ199922
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTANCGAAAAAGANGT-AGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCANGATCCCGTCGCCCCCCEST: gi|208350777|gb|DC909908.1|DC909908
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
EST: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAG ATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
genomic: GTCCTAGCGAAAAAGAGGTCAGGTTTCGCCGAATTGTTCTTGAACAAAAGgtatgtgcat ... gtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCC
ttttgtattgtagtgagactggcttggaattttatgcctgtgaatgtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCATTGAAGCGAGGCAAAGTTTCGCCTCGCTTGGAGGTTCCTAAGCACATT
aattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatgtatagaacagctatcctcttctgtgcaattacttgagtttttgtattgtagtgagactggcttggaattttatgcctgtgaatgtaattgcagATTAAGCGAGCAAGGGAAACAGGTTGATGAATCAGGATCCCGTCGCCCCCCATTGAAGCGAGGCAAAGTTTCGCCTCGCTTGGAGGTTCCTAAGCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG