1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatattagtgttttcatattcgctttattcaccagcactcaacatgatctgaacctcttgttggtgttcttaacacgtttaacgttgttaatcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTGTGCGTGGTAAGGAGATCTGGATCACTACTGACTACAATCACTTGGGAG
species | Physcomitrella patens |
transcript | PP1S90_134V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATEST: gi|18372531|gb|BJ204133.1|BJ204133
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGAT
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTEST: gi|18366005|gb|BJ198083.1|BJ198083
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGEST: gi|100424327|gb|BY958429.1|BY958429
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAG
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTEST: gi|18360443|gb|BJ192505.1|BJ192505
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTEST: gi|67574551|gb|BJ947375.1|BJ947375
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTEST: gi|18358297|gb|BJ190356.1|BJ190356
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
gatctgaacctcttgttggtgttcttaacacgtttaacgttgttaatcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTGTGCGTGGTAAGGAGATCTGGATCACTACTGACTACAATCACTTGGGAG
ttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatattagtgttttcatattcgctttattcaccagcactcaacatgatctgaacctcttgttggtgttcttaacacgtttaacgttgttaatcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTTGTGCGTGGTAAGGAGATCTGGATCACTACTGACTACAATCACTTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC