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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaatcgcttcgttgagaaagttaagtttgacgttggaattcctttaccttaaagcaagccacaatatggaatctgagattaaattccttacacttttgcagTTTTGAGGACATGCTAACGCGGTTTGCGAATTTCCATATGATTCATGATCGGAACAAATACAATAG

Basic information

species Physcomitrella patens
transcript PP1S8_95V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22773462|gb|AJ487541.1|AJ487541
EST:     GATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAACAAAAG                         TTTTGAGGACATGCTAACGCGGTTTGCGAATTTCCATATGATTCATGATCG
genomic: GATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAACAAAAGgtaagaaaat ... acttttgcagTTTTGAGGACATGCTAACGCGGTTTGCGAATTTCCATATGATTCATGATCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttaaagcaagccacaatatggaatctgagattaaattccttacacttttgcagTTTTGAGGACATGCTAACGCGGTTTGCGAATTTCCATATGATTCATGATCGGAACAAATACAATAG
                                      tccttac  putative branch site (score: 2)
                                     ttccttacactttt  CT-rich tract
                             agattaaatt  TA-rich tract