1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgccgtttccgtgtgatgcggtttgttcgtgagggggtgatgggacgtattttggaagtgggcaacgcgttgctgacagtgtgtgtgtggtggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCACCCAGATGGCCCAGCAGCTGCAGAGCAGCGTGCAGAGTGCTGGAAGCG
species | Physcomitrella patens |
transcript | PP1S8_3V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162156693|gb|FC333549.1|FC333549
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162151736|gb|FC328593.1|FC328593
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162192827|gb|FC369652.1|FC369652
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162277694|gb|FC453533.1|FC453533
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162153901|gb|FC329408.1|FC329408
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162182198|gb|FC358213.1|FC358213
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|100388693|gb|BY970841.1|BY970841
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162189806|gb|FC366055.1|FC366055
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCEST: gi|162152256|gb|FC328235.1|FC328235
genomic: AGGGAGGAGCCAACCCATTCGATTTTTCAGCCATGTCTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
EST: CTGGGCTGTTGAAC GATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
genomic: CTGGGCTGTTGAACgtacgtccca ... tggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTC
cgtattttggaagtgggcaacgcgttgctgacagtgtgtgtgtggtggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCACCCAGATGGCCCAGCAGCTGCAGAGCAGCGTGCAGAGTGCTGGAAGCG
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccgtttccgtgtgatgcggtttgttcgtgagggggtgatgggacgtattttggaagtgggcaacgcgttgctgacagtgtgtgtgtggtggtgttcagGATCCCAGCATCAAGGAGATGGCGGAGCAGATCGCTAAAGATCCCGCATTCACCCAGATGGCCCAGCAGCTGCAGAGCAGCGTGCAGAGTGCTGGAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG