1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accatctttgtcatgtccaaacagtcacatcagatctggtttaattcttcacttcaagtgattttatgatgtttctgacgcttcgaacttttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGTTTCACGAAGCATTCTCCAGCATACAGAGTGTTGATGTTGGGACGTGTG
species | Physcomitrella patens |
transcript | PP1S8_271V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|162171811|gb|FC348454.1|FC348454
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|162274080|gb|FC450152.1|FC450152
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|208393132|gb|DC929627.1|DC929627
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|208400682|gb|DC904860.1|DC904860
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCCGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGANGATGAGTGTCATCTACTGTATCACATANATTCTGAGTTGEST: gi|100362618|gb|BY947443.1|BY947443
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTTEST: gi|18370368|gb|BJ201970.1|BJ201970
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTT-
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|208370329|gb|DC931741.1|DC931741
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGANTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|100389402|gb|BY988880.1|BY988880
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGEST: gi|162187639|gb|FC364096.1|FC364096
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
EST: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATA TGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
genomic: GGATCCTCGATGATCTTCGGGACTGTTGTCGGATCTCTTGCCGATCGATAgtacgtgtgt ... ttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTG
tcttcacttcaagtgattttatgatgtttctgacgcttcgaacttttgcttatagTGGGCGCAAGAGGATGAGTGTCATCTACTGTATCACATATATTCTGAGTTGTTTCACGAAGCATTCTCCAGCATACAGAGTGTTGATGTTGGGACGTGTG
ttctgac putative branch site (score: 5)
cttttgctt putative PPT
attttatgatgttt TA-rich tract