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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgttttgaaactctaacttcggagcgctgcagtaactcgaagctgaagctgaatttcgacagatcctaaataggaatggtgtgttacattgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATATAAGGGAGTGTTTGACTATCTAGCGGCCAAAGGCGACGGTGTTCAACCCG

Basic information

species Physcomitrella patens
transcript PP1S89_154V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376956|gb|DC936762.1|DC936762
EST:     TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAG                         GAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
genomic: TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAGgtcgctttta ... attgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
EST: gi|100427974|gb|BY959219.1|BY959219
EST:     TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAG                         GAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
genomic: TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAGgtcgctttta ... attgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
EST: gi|162272815|gb|FC448803.1|FC448803
EST:     TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAG                         GAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
genomic: TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAGgtcgctttta ... attgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
EST: gi|208363621|gb|DC935330.1|DC935330
EST:     TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCTTTCCCAG                         GAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT
genomic: TCAACTCTTCAGAATTTCAGGCTTGCTCTTTCTCAGCGGACCCTTCCCAGgtcgctttta ... attgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaagctgaatttcgacagatcctaaataggaatggtgtgttacattgtaacagGAAGTGGATAGAGCGAATCACGTTTGGGCAAATTACTTCATTTGCGGATATAAGGGAGTGTTTGACTATCTAGCGGCCAAAGGCGACGGTGTTCAACCCG
                     tcctaaa  putative branch site (score: 2)
                        taaata  TA-rich tract