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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaattgccgcttttcacaaatatctacgtgctttttgtatgttggtgtgcaattgactttcacatttagtatacctaagatggtgtttggttatgtagGAGGGAGATATTGAGAAGGCGCAACTCGGTCTTGCTCACAGTTACAGTCGCAGTAAAGTTAAGTTCAATGTTAACCGAGTAGATAACATGATCATTCAAA

Basic information

species Physcomitrella patens
transcript PP1S88_119V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S88_119V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 3'ss of exon 2
ttgaattgccgcttttcacaaatatctacgtgctttttgtatgttggtgtgcaattgactttcacatttagtataccta-agatggtgtttggttatgtagGAGGGAGATATTGAGAAGGCGCAACTCGGTCTTGCTCACAGTTACAGTCGCAGTAAAGTTAAGTTCAATGTTAACCGAGTAGATAACATGATCATTCAAA
  |  |   | | ||||  |  | | ||    |||||||| |||| |       ||  ||   |   || || | |  | | |   | | || ||||||||   || ||| |||| ||  | || || ||  | |||||||| |||||  |    || || |||||||||||||||||||| ||||||||| | |||||| 
--gtgtgatctcctttc-tatgtgtttaaaatctttttgtctgtttgc------ttatctcatatggtttgtgttctcataaaaaatttctgtttatgtagCCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtgcaattgactttcacatttagtatacctaagatggtgtttggttatgtagGAGGGAGATATTGAGAAGGCGCAACTCGGTCTTGCTCACAGTTACAGTCGCAGTAAAGTTAAGTTCAATGTTAACCGAGTAGATAACATGATCATTCAAA
       aattgac  putative branch site (score: 3)
                    atttagtata  TA-rich tract