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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttatcactctttcaactacttaaagtacgaggacaaacactatgcgacgcttacattcttgtgctcatagtgacatcttacttttggtgatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAAATTCTCAGAATGCCGTGTATTGGGCCAATCGCGCTTTTGCCCATACGAA

Basic information

species Physcomitrella patens
transcript PP1S87_139V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18342758|gb|BJ174793.1|BJ174793
EST:     TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGG                         CAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
genomic: TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGGgtaaaacatt ... gatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
EST: gi|100358847|gb|BY946718.1|BY946718
EST:     TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGG                         CAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
genomic: TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGGgtaaaacatt ... gatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
EST: gi|208366737|gb|DC931394.1|DC931394
EST:     TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGG                         CAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
genomic: TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGGgtaaaacatt ... gatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
EST: gi|100377583|gb|BY986310.1|BY986310
EST:     TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGG                         CAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA
genomic: TGCAGCGAAGGCTGAGAAACTGAAGGCAGCTGCTAATGCTGCATTCCAGGgtaaaacatt ... gatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgacgcttacattcttgtgctcatagtgacatcttacttttggtgatgatgcagCAAACAAATTTTCCTCTGCAATAGAACTGTACAGTCAAGCTATTGATCTAAATTCTCAGAATGCCGTGTATTGGGCCAATCGCGCTTTTGCCCATACGAA
                               atcttac  putative branch site (score: 3)
                                  ttactttt  TA-rich tract