1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgacatttgagttgcgactaattgacttcatctttgcggttcgatgagtcttcctcattttgtacgctgtgtaacgtgaatcaatcttgttatgaaatccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC
species | Physcomitrella patens |
transcript | PP1S86_156V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|67702425|gb|BJ962658.1|BJ962658
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|67702738|gb|BJ962971.1|BJ962971
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|18369589|gb|BJ201677.1|BJ201677
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|18327439|gb|BJ159442.1|BJ159442
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACAGAGGCCAAGATTAAGGTCEST: gi|162165551|gb|FC340662.1|FC340662
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCEST: gi|67703574|gb|BJ963807.1|BJ963807
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCANCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|67703081|gb|BJ963314.1|BJ963314
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|100388525|gb|BY952127.1|BY952127
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCEST: gi|67576301|gb|BJ949125.1|BJ949125
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
tccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC
atttgac putative branch site (score: 4)
ttaatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacatttgagttgcgactaattgacttcatctttgcggttcgatgagtcttcctcattttgtacgctgtgtaacgtgaatcaatcttgttatgaaatccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC
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