Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacatttgagttgcgactaattgacttcatctttgcggttcgatgagtcttcctcattttgtacgctgtgtaacgtgaatcaatcttgttatgaaatccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC

Basic information

species Physcomitrella patens
transcript PP1S86_156V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S86_156V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G12900.3 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------gtatgacatttgagttgcg-actaattgacttcatctttgcggttcgatgagtcttcctcattttgtacgctgtgtaacgtgaatcaatctt-----------gttatgaaatccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGC---CACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC
                            |||  |   || |||    |     ||     |||||      || |    | || ||  | |   | ||     |  ||  ||| |||             | |           |      ||  |   || ||  |||  |  |||   |   |||| |||||      |||   || |    ||  |  |  || |||||||||||||| ||||| ||||||||||| |||||  | || ||| | |||||| |  | || |   
gtgagttcctttttcacccactcctctctattgctcctgtgttatatatcttatggtgcaatcttgtaaactcaagagctgtttcttgtgtctaatgccac-cattgtagatctatccatgatgaacaaggctgcatggcatgatcagccatgattaaccatatacgttttttttttctgtctctgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTTCGGTAGGATTGGTAGGAACTTCTTGAGGTGTT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393166|gb|DC907989.1|DC907989
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100440793|gb|BY980613.1|BY980613
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100420462|gb|BY976031.1|BY976031
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162190918|gb|FC368116.1|FC368116
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162199260|gb|FC375096.1|FC375096
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162196266|gb|FC374348.1|FC374348
EST:     CACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: CACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|18369527|gb|BJ201614.1|BJ201614
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67702425|gb|BJ962658.1|BJ962658
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67507784|gb|BJ940662.1|BJ940662
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162236333|gb|FC411452.1|FC411452
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100389555|gb|BY989033.1|BY989033
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162218959|gb|FC395178.1|FC395178
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100394378|gb|BY972039.1|BY972039
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67702738|gb|BJ962971.1|BJ962971
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162153557|gb|FC330145.1|FC330145
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100425421|gb|BY958586.1|BY958586
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100363831|gb|BY966192.1|BY966192
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100396366|gb|BY990094.1|BY990094
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162155485|gb|FC330968.1|FC330968
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100352166|gb|BY983072.1|BY983072
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162171442|gb|FC346717.1|FC346717
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162158674|gb|FC335548.1|FC335548
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208357356|gb|DC910711.1|DC910711
EST:     CTCANTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: CTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162183743|gb|FC360660.1|FC360660
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208376981|gb|DC910815.1|DC910815
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100416539|gb|BY975438.1|BY975438
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162194766|gb|FC371613.1|FC371613
EST:     CAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: CAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|18327439|gb|BJ159442.1|BJ159442
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACAGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162165551|gb|FC340662.1|FC340662
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGC
EST: gi|162216599|gb|FC393523.1|FC393523
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208347100|gb|DC909370.1|DC909370
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|18373797|gb|BJ205375.1|BJ205375
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162181161|gb|FC357606.1|FC357606
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100382379|gb|BY969093.1|BY969093
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162233187|gb|FC409010.1|FC409010
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162179847|gb|FC355918.1|FC355918
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208349869|gb|DC905993.1|DC905993
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100443668|gb|BY963765.1|BY963765
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100395353|gb|BY953695.1|BY953695
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162220632|gb|FC396844.1|FC396844
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67575170|gb|BJ947994.1|BJ947994
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208348576|gb|DC913248.1|DC913248
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100399917|gb|BY990686.1|BY990686
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162195313|gb|FC369807.1|FC369807
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67703081|gb|BJ963314.1|BJ963314
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100363427|gb|BY966383.1|BY966383
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162255129|gb|FC430744.1|FC430744
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100446404|gb|CJ970703.1|CJ970703
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162185742|gb|FC362090.1|FC362090
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100362294|gb|BY947287.1|BY947287
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100365598|gb|BY966676.1|BY966676
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162280151|gb|FC455960.1|FC455960
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100448710|gb|CJ973009.1|CJ973009
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|18369589|gb|BJ201677.1|BJ201677
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100388914|gb|BY988790.1|BY988790
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67716774|gb|BJ967034.1|BJ967034
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162177997|gb|FC354103.1|FC354103
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67569967|gb|BJ942791.1|BJ942791
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100410898|gb|BY956238.1|BY956238
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162161465|gb|FC337645.1|FC337645
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162226328|gb|FC403244.1|FC403244
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162186910|gb|FC362588.1|FC362588
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100426520|gb|BY977289.1|BY977289
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|18326015|gb|BJ158014.1|BJ158014
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162176839|gb|FC353347.1|FC353347
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162166002|gb|FC341807.1|FC341807
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100383745|gb|BY969274.1|BY969274
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100399895|gb|BY990675.1|BY990675
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100370919|gb|BY968120.1|BY968120
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67576301|gb|BJ949125.1|BJ949125
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100390771|gb|BY989254.1|BY989254
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162163473|gb|FC340007.1|FC340007
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162178215|gb|FC354933.1|FC354933
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|67703574|gb|BJ963807.1|BJ963807
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCANCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162188129|gb|FC363895.1|FC363895
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100413547|gb|BY956722.1|BY956722
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162256719|gb|FC433237.1|FC433237
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100407013|gb|BY973966.1|BY973966
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100438447|gb|BY979961.1|BY979961
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|162260769|gb|FC435421.1|FC435421
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|208357626|gb|DC914026.1|DC914026
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100418087|gb|BY993329.1|BY993329
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
EST: gi|100443404|gb|BY963700.1|BY963700
EST:     GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTG                         GCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC
genomic: GCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 48

TGGATTCTCCGACTTCTCCGGAATGAAGAGCACCAACGCTGTCACATTTGGCAAGCGCTCCGATGACCTCGCCACCATTGTATCAGCTCAGTCCGCAGTGgtatgacatt ... tgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC
                                  atttgac  putative branch site (score: 48)
                            ttaatcattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgacatttgagttgcgactaattgacttcatctttgcggttcgatgagtcttcctcattttgtacgctgtgtaacgtgaatcaatcttgttatgaaatccagttgctggtgcatgttcacatcggttaatcatttgactggttgtggtgtagGCTGCCAGCTCCGGCGCCACCAGGGCCGTCACCGAGGCCAAGATTAAGGTCGCCATCAATGGATTCGGACGCATCGGTCGTAACTTCGTCCGCTGCTGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT