1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacacgtatcaacctccgcattctggggtacttctttcacgtgaagtttaagtggttgtggtcgtaatattttcgcactactgaagggtgttttaatgtccgacagccttcgttactttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACTATCTGCGATGCGATCCAGAAGATCATTATATGTTACTCACTGAGAGCC
species | Physcomitrella patens |
transcript | PP1S85_160V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|18351206|gb|BJ183257.1|BJ183257
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|100397452|gb|BY972506.1|BY972506
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|67570355|gb|BJ943179.1|BJ943179
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|100448162|gb|CJ972461.1|CJ972461
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|208359135|gb|DC930467.1|DC930467
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTTAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|100440187|gb|BY980439.1|BY980439
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACEST: gi|100365851|gb|BY967178.1|BY967178
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
EST: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAG ATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
genomic: AGCAACACTCAAGTGCGTACACTCTTAGTTATCCCATTCGACAAGGCCAGgtacacgtat ... ctttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAAC
tttcgcactactgaagggtgttttaatgtccgacagccttcgttactttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACTATCTGCGATGCGATCCAGAAGATCATTATATGTTACTCACTGAGAGCC
ttttaat putative branch site (score: 3)
ccttcgttacttttt putative PPT
tgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacgtatcaacctccgcattctggggtacttctttcacgtgaagtttaagtggttgtggtcgtaatattttcgcactactgaagggtgttttaatgtccgacagccttcgttactttttgcagATTGAAAATTGGGATACGATGGAGAGATTTTGGCAGCAATGCCTCTTCAACTATCTGCGATGCGATCCAGAAGATCATTATATGTTACTCACTGAGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA