1 5' 3' | 2 5' 3' |
...cggcctctctagacctgtgaccacttgtttttggttatttgtatgagattaggtcgtatgatgatttaggtttgtactggatgtaaatttttgatcgcagGCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATTACGACAATGAATATAAAAAGGCTAAATTGCTGGCTAAGGGGCCTGAGAT
species | Physcomitrella patens |
transcript | PP1S84_48V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAG GCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATTEST: gi|162181772|gb|FC357371.1|FC357371
genomic: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAGgtactttgtc ... ttgatcgcagGCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATT
EST: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAG GCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATTEST: gi|37821400|gb|BJ579466.1|BJ579466
genomic: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAGgtactttgtc ... ttgatcgcagGCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATT
EST: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAG GCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATT
genomic: GAGTTGGAATTCCAGTGAAGATGAGCTGGATTGTATGGAGGCTGATGAAGgtactttgtc ... ttgatcgcagGCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATT
agattaggtcgtatgatgatttaggtttgtactggatgtaaatttttgatcgcagGCTCAGATGGAGGTCATTCGGGCAGCTTCGAGGAACTCAGACGTAAGCATTACGACAATGAATATAAAAAGGCTAAATTGCTGGCTAAGGGGCCTGAGAT
ttttgat putative branch site (score: 13)
ttttt CT-rich tract
atgtaaatttttgat TA-rich tract