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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggtctcaaactggacgtcacgtagggagaaatgagaggagtttgattgctttgatctatattgataaggagctatgtaatgatgtgcagcatggatttgtcagcttgtatgtgtgaccgtttgttgacgcgatgttgtaacatatggatggcccagAAAAGTAAGCCTGGAGAACCTTCATGGGATTCTCCTTGGGGCCCGGGACGTCCAGGCTGGCACATTGAGTGTTCGGCAATGGCCAGTGACATACTGGGTG

Basic information

species Physcomitrella patens
transcript PP1S83_56V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S83_56V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ14506 (Selaginella moellendorffii), 3'ss of exon 6
gtgagtggtctcaaactggacgtcacgtagggagaaatgagaggagtttgattgctttgatctatattgataaggagctatgtaatgatgtgcagcatggatttgtcagcttgtatgtgtgaccgtttgttgacgcgatgttgtaacatatggatggcccagAAAAGTAAGCCTGGAGAACCTTCATGGGATTCTCCTTGGGGCCCGGGACGTCCAGGCTGGCACATTGAGTGTTCGGCAATGGCCAGTGACATACTGGGTG
                                                                                                                    ||  | |  |  ||| |    |    || ||| ||   |    ||| |||| ||   ||| || ||||  |||||||| || ||||| || || ||||| || |||||||| ||||| ||||| |||||||||||| |  | || |
--------------------------------------------------------------------------------------------------------------------gtacg-ctatgagtttagagcaccacgtgacaaattcgtt-tgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCCCCATGGGGACCTGGCCGTCCTGGTTGGCACATCGAGTGCTCGGCTATGGCCAGTGACGTTATTGGGG

upper sequence: PP1S83_56V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ26208 (Selaginella moellendorffii), 3'ss of exon 6
gtgagtggtctcaaactggacgtcacgtagggagaaatgagaggagtttgattgctttgatctatattgataaggagctatgtaatgatgtgcagcatggatttgtcagcttgtatgtgtgaccgtttgttgacgcgatgttgtaacatatggatggcccagAAAAGTAAGCCTGGAGAACCTTCATGGGATTCTCCTTGGGGCCCGGGACGTCCAGGCTGGCACATTGAGTGTTCGGCAATGGCCAGTGACATACTGGGTG
                                                                                                                    ||  | |     ||| |    | || || ||| ||   |    ||| |||| ||   ||| || ||||  ||||||||||| ||||| || || ||||| || |||||||| ||||| ||||| |||||||||||| |  | || |
--------------------------------------------------------------------------------------------------------------------gtacg-ctacgagtttatagcacgtcgtgacaaatttgtt-tgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCTCCATGGGGACCTGGCCGTCCTGGTTGGCACATCGAGTGCTCGGCTATGGCCAGTGACGTTATTGGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgtatgtgtgaccgtttgttgacgcgatgttgtaacatatggatggcccagAAAAGTAAGCCTGGAGAACCTTCATGGGATTCTCCTTGGGGCCCGGGACGTCCAGGCTGGCACATTGAGTGTTCGGCAATGGCCAGTGACATACTGGGTG
                                 ttgtaac  putative branch site (score: 2)
                                    taacatat  TA-rich tract