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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttggaagattgccagtcatgtcgaagattggattatctgggttttctttggacgtgtggattttagctagaggctccttaacaacatctgattcctcagGCCGAACTCGATGTCAAGTGGCCAAGACAGTGACCAAGCTCCTCCTCGGCATCTTGCCAACGCCCTGGATGGGCTTGGTCGGGCCGTCCGCCATATTGCC

Basic information

species Physcomitrella patens
transcript PP1S83_135V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100441865|gb|BY981088.1|BY981088
EST:     GCAGTGGATCAACCTGAGCCACCACCTCCAACAGGACAAGATGTTGACAG                         GCCGAACTCGATGTCAAGTGGCCAAGACAGTGACCAAGCTCCTCCTCGGCA
genomic: GCAGTGGATCAACCTGAGCCACCACCTCCAACAGGACAAGATGTTGACAGgtattccttc ... gattcctcagGCCGAACTCGATGTCAAGTGGCCAAGACAGTGACCAAGCTCCTCCTCGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttggacgtgtggattttagctagaggctccttaacaacatctgattcctcagGCCGAACTCGATGTCAAGTGGCCAAGACAGTGACCAAGCTCCTCCTCGGCATCTTGCCAACGCCCTGGATGGGCTTGGTCGGGCCGTCCGCCATATTGCC
                                               ttcctc  CT-rich tract
               atttta  TA-rich tract