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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaatgcggtttcgcgatgggaggggtgacctggagctggtttgctgagcgttccctgattcgtgttgttgtgggcatgtgcatttgcggtggcatcagCCGTCGACTGTGGTGACGAAGGCAGCCTCTGTGGCGACCCCAAGATCGTGGGAGGCGACGGCGTGATGTTCTACTTCCACGGCTACAAGGGCGCAGACTT

Basic information

species Physcomitrella patens
transcript PP1S82_88V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S82_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G20710.1 (Glycine max), 3'ss of exon 1
---tgcaatgcggtttcgcgatgggaggggtgacctggagctggtttgctgagcgttccctgattcgtgttgttgtgggcat---gtgcatttgcggtggcatcagCC--GTCGACTGTGGTGACGAAGGCAGCCTCTGTGGCGACCCCAAGATCGTGGGAGGCGACGGCGTGATGTTCTACTTCCACGGCTACAAGGGCGCAGACTT
   |  ||    ||| |    |   |      |  |  || || ||| ||||  | |     | |     || |       |   ||   ||||   ||   | ||    | | | |||| ||   | ||    || |||   || ||     | || || |||||||| ||||||||||||||||||||   ||| || |       
cactctaaatttgttgccttttataaaacac-attttaagatgattt-ctgattggttgagaagtgagactggtactcatgtttagttagtttgttttgcagTTAGGAAAGCCAATTGTGATGGGTATGGATCTCTGTGTTATGATCCTCGCTTTGTTGGTGGCGACGGTGTGATGTTCTACTTCCACGGTGCCAAAGGAGG------

upper sequence: PP1S82_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ15093 (Selaginella moellendorffii), 3'ss of exon 1
tgcaatgcggtttcgcgatgggaggggtgacctggagctggtttgctgagcgttccctgattcgtgttgttgtgggcatgtgcatttgcggtggcatcagCCGTCGACTGTGGTGACGAAGGCAGCCTCTGTGGCGACCCCAAGATCGTGGGAGGCGACGGCGTGATGTTCTACTTCCACGGCTACAAGGGCGCAGACTT
                   | |||  ||| | |    ||  ||  ||  ||      || |||   || |   ||  |  |   |||     | |   ||||  | ||||| | | | | |||  | ||||   |||||||    |||||||||| ||||| || ||||||||||||||||||     || |        
-------------------gtgagttgtg-ctttcctcttattctctttgcaa---atgtttctgcttctcacggctagctttgttttacagGCCGGAAGCC--CAACTGTCGAGGCTATGGCTCCGTCTGCTACGACCCCCGCTTCGTGGGAGGAGACGGAGTCATGTTCTACTTCCACGGCATGTCGGACAA------

upper sequence: PP1S82_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ37596 (Selaginella moellendorffii), 3'ss of exon 1
tgcaatgcggtttcgcgatgggaggggtgacctggagctggtttgctgagcgttccctgattcgtgttgttgtgggcatgtgcatttgcggtggcatcagCCGTCGACTGTGGTGACGAAGGCAGCCTCTGTGGCGACCCCAAGATCGTGGGAGGCGACGGCGTGATGTTCTACTTCCACGGCTACAAGGGCGCAGACTT
                   | |||  ||| | |    ||  ||  ||  ||      |  | | | |    |   || | ||  ||| | | | |   ||||  | ||||| | | | | |||  | ||||   |||||||    |||||||||| ||||| || ||||||||||||||||||     || |        
-------------------gtgagttgtg-ctttcctcttattctctttgcaaatgtttctgcttctcacggctagc-tttgtttttacag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagcgttccctgattcgtgttgttgtgggcatgtgcatttgcggtggcatcagCCGTCGACTGTGGTGACGAAGGCAGCCTCTGTGGCGACCCCAAGATCGTGGGAGGCGACGGCGTGATGTTCTACTTCCACGGCTACAAGGGCGCAGACTT
         ccctgat  putative branch site (score: 4)