1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtaccactgaagcagttctcatgtggctctcttcgtacatttttacattccgtataacctgtttaagtgactgaaactgaaaatgtgattgtctcttgttgggtggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
species | Physcomitrella patens |
transcript | PP1S80_3V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|67695765|gb|BJ955998.1|BJ955998
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: ACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162264936|gb|FC441439.1|FC441439
genomic: ACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162201813|gb|FC377747.1|FC377747
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162155897|gb|FC332446.1|FC332446
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162259609|gb|FC435536.1|FC435536
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: CTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162155898|gb|FC332447.1|FC332447
genomic: CTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|67698662|gb|BJ958895.1|BJ958895
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AACACCAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162150285|gb|FC326370.1|FC326370
genomic: AACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162243581|gb|FC419518.1|FC419518
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162211924|gb|FC387796.1|FC387796
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAGEST: gi|162201814|gb|FC377748.1|FC377748
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
EST: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAG GATTGAAAAAGGCTGAGAAAGGAGAG
genomic: AAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACAAGCCTTCTGAAGgttcgtacca ... tggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
ctgtttaagtgactgaaactgaaaatgtgattgtctcttgttgggtggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
tgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtaccactgaagcagttctcatgtggctctcttcgtacatttttacattccgtataacctgtttaagtgactgaaactgaaaatgtgattgtctcttgttgggtggacaacagGATTGAAAAAGGCTGAGAAAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA