1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtttgatatgacacgatgtctttgggagggttgcttcataagatatagaatactggagtgtatctaacctagcgatggttgaactttgttgtcctacagTAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACATGTTCGCTGTGGAGGAGTATCTTCACGACTTTTTGACGGAAAGCCCTGTC
species | Physcomitrella patens |
transcript | PP1S7_455V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAG TAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACATEST: gi|162180723|gb|FC357808.1|FC357808
genomic: GAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAGgtatttattt ... tgtcctacagTAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACAT
EST: GAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAG TAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACAT
genomic: GAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAGgtatttattt ... tgtcctacagTAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACAT
atagaatactggagtgtatctaacctagcgatggttgaactttgttgtcctacagTAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACATGTTCGCTGTGGAGGAGTATCTTCACGACTTTTTGACGGAAAGCCCTGTC
atctaac putative branch site (score: 1)
ctttgtt putative PPT
tatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgatatgacacgatgtctttgggagggttgcttcataagatatagaatactggagtgtatctaacctagcgatggttgaactttgttgtcctacagTAAATATAACACTGATTGGTTGAAAAAGGACCCTCGCTGTCTTACACACATGTTCGCTGTGGAGGAGTATCTTCACGACTTTTTGACGGAAAGCCCTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - tgcttca