Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtggaatgttgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG

Basic information

species Physcomitrella patens
transcript PP1S7_369V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_369V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtggaatgt-tgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG
                       |    || |||    |      || |  | |  | | | |  |  ||   ||||   |   | | |||  ||   ||||||||||| |||||||||||||  |||||||||| |||| ||  || || ||||||||                                          
----------------------gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatg---tagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG------------------------------------------

upper sequence: PP1S7_369V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 3
gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtggaatgttgtagaggagtg-ctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAG---ATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG
                                 |     | || |   || ||  ||  || |  |   |  ||||||      || | |  || ||  |   ||||||   ||  |   ||||| |  |||   | |||| |  || | | |  ||| |    | |   || | ||                           
--------------------------------gtaaattccttgtgaaagctgcgattgtgaaacgagttctctgactatcacgttctttcttttatagATCTTCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGA-GAGTCGAGCCGTACGTGACTTACGG------------------------

upper sequence: PP1S7_369V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 3
gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtg-gaatgttgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAG---ATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG
                                 |     | || |   || || || |||  ||   |    || |||      || | |  || ||  |   ||||||   ||  |   ||||| |  |||   | |||| |  || | | |  ||| |    | |   || | ||                           
--------------------------------gtaaattccttgtgaaagttgcgattgtgatacgagttctcttactatcacattctttcttttatagATCTTCAATGGGGTGTTCATGAAGGTGAACAAGGCAACCATGAACATGCTCAAGA-GAGTCGAGCCGTACGTGACTTACGG------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202963|gb|FC380348.1|FC380348
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162206138|gb|FC383131.1|FC383131
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67710007|gb|BJ965816.1|BJ965816
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162217475|gb|FC393151.1|FC393151
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|7147639|gb|AW509561.1|AW509561
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162268134|gb|FC443812.1|FC443812
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162276099|gb|FC452375.1|FC452375
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18325454|gb|BJ157451.1|BJ157451
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|19789428|gb|BQ041303.1|BQ041303
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67716289|gb|BJ966549.1|BJ966549
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162192487|gb|FC368623.1|FC368623
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162261536|gb|FC437553.1|FC437553
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18335591|gb|BJ167611.1|BJ167611
EST:     TTNTATGTCGAGCCTGAGCCCAAGCTTATGTTNGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67702006|gb|BJ962239.1|BJ962239
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTC
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTC
EST: gi|162230958|gb|FC407213.1|FC407213
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67693912|gb|BJ954145.1|BJ954145
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162219897|gb|FC396712.1|FC396712
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18343052|gb|BJ175089.1|BJ175089
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18335238|gb|BJ167256.1|BJ167256
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162268133|gb|FC443811.1|FC443811
EST:     TTNTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67570505|gb|BJ943329.1|BJ943329
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67724079|gb|BJ974338.1|BJ974338
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162266141|gb|FC441890.1|FC441890
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162206137|gb|FC383130.1|FC383130
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67692997|gb|BJ953230.1|BJ953230
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162227557|gb|FC403499.1|FC403499
EST:     CGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: CGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162215743|gb|FC391744.1|FC391744
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162217474|gb|FC393150.1|FC393150
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67720876|gb|BJ971135.1|BJ971135
EST:     TATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCNGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18327318|gb|BJ159320.1|BJ159320
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162254771|gb|FC431060.1|FC431060
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162266140|gb|FC441889.1|FC441889
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67703365|gb|BJ963598.1|BJ963598
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCA
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCA
EST: gi|18337941|gb|BJ169965.1|BJ169965
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67569731|gb|BJ942555.1|BJ942555
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162230957|gb|FC407212.1|FC407212
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|15727544|gb|BI740344.1|BI740344
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67703254|gb|BJ963487.1|BJ963487
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAG
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAG
EST: gi|7207256|gb|AW561259.1|AW561259
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67693788|gb|BJ954021.1|BJ954021
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67720498|gb|BJ970757.1|BJ970757
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18372920|gb|BJ204522.1|BJ204522
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67702376|gb|BJ962609.1|BJ962609
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|18330136|gb|BJ162142.1|BJ162142
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162261535|gb|FC437552.1|FC437552
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162202964|gb|FC380349.1|FC380349
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|162215742|gb|FC391743.1|FC391743
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67704221|gb|BJ964454.1|BJ964454
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|37843436|gb|BJ601444.1|BJ601444
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|67570628|gb|BJ943452.1|BJ943452
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|19787357|gb|BQ040606.1|BQ040606
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
EST: gi|37822200|gb|BJ580266.1|BJ580266
EST:     TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGG                         TATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT
genomic: TTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 99

GAGAAGGAATTGATAAGCTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCTATGTCGAGCCTGAGCCCAAGCTTATGTTCGTCGTCCGTATCCGTGGgtaagttcaa ... gttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaggtggaatgttgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG
                              cttcttttttttcttg  CT-rich tract
                               ttcttttttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatcaatttcctgtttaaatttctctctaattatgttccctttttttgaggtggaatgttgtagaggagtgctgacttcttttttttcttgttgatctagTATCAATGACATGCACCCCAAGGTCAGGAAGATCATGCAACTGTTGAGGCTGAGGCAGATCTTCAATGGCGTATTCATGAAGGTGAACAAGGCTACCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT