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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC

Basic information

species Physcomitrella patens
transcript PP1S7_364V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga--------cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
    |  | |   |||| | |   |   |  ||  | |  ||| |   ||  ||||||   ||   |  || |  |||| |  | |  |||| || |        ||||| || || || || || ||||| ||    || || || ||||||||||||||  ||||||||||||| ||||| || || ||| ||||||||||||| |
----tagt-atgctatg-ttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctga-cgttgtgttgtg-gtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
ttgatgatgaaaatatggtcgatattcgtctt-ttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga-cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
   |        |  ||   |  || | |    ||  ||  |    |   |  |||||   |    || |  |   ||||||  | |  | | | ||  ||||| || || || || |||||||| ||  | || || || ||||||||||||||  | ||||||||||| ||||| || || ||| ||||||||||||| |
--aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 2
ttgatgatgaaaatatggtcgat--attcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga-cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
   ||||  ||    |  | |    | |  |  |   || | | |||    || ||  ||| | |  ||   ||   ||||||  | |  | | | ||  ||||| || || || || || ||||| ||    || || || ||||||||||||||  | ||||||||||| ||||| || || ||| ||||||||||||| |
---atgaacaactcgtacttgtctgagtaataatgcattgaactagttcactctgaaaatttgagtagttgctgggtctgaacgttgtgttatttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G302876_T01 (Zea mays), 3'ss of exon 4
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgac--------agGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
       |   | | | |  | ||  | |  ||    |  |    |  ||  |||||    ||   |  || ||| |  |   | |  |||| || |         ||||||| ||  |||| |  ||||| ||  | |  || ||||||||||||||| |  ||||| ||||||| ||||| || || ||| ||||||||||||| |
-----attaggagtcttgagggtacccctaattatggtccccgaca-agtttgagtacctatgtcatgatt-ttatttgatgttgtgttgtg-gtaattcatctttagGGTTATGTTATGTACCTTGTCCGTGTGAGGCATGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AC212184.3_FGT010 (Zea mays), 3'ss of exon 1
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga--------cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
      |  |   |||| | |   |   |  ||| |||    | |   ||  |||||    ||   |  || ||| |  |   |||  | || || |        ||| |||| || ||||| |  ||||| ||  | || || ||||||||||||||| |  ||||| ||||||| ||||| || || ||| ||||||||||||| |
------agtatgctatgttaggcttgtttactttattttattattgcagtttgagtacctatgtcatgatt-ttatttgatgttatgttctg-gtaattcatcttcagAGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAATCCAAAGCACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
-----ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
        || |||| ||  ||| |   |||  | |  |    |||||| | | | |   | ||     ||    |  | |  ||||||||  | | | |   |||| || ||  | ||||| || || ||  | || || ||| |||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||| |||| |
tgtttaaaattatgacaaactggcc--cattaatttgataagcatcaag-acgatgattctttttactttgattataatgccaaacactattttctattt--tagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
                     | |||  || ||| ||  |            | ||  |||   | |  | ||| |        |||||       |||||| ||||| || || || ||||| || || ||||||||  | |||||||| ||  ||||||| ||||| |||||||| || ||||||||||||||||| |
------------------gtaaaatttctcctttcttcgt------------gtgtgctagctctttgatcgtttcgtgctcgaatcctc------acagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
                     | |||  || ||| ||  |            | ||  |||   | |  | ||| |        |||||       |||||| ||||| || || || ||||| || || ||||||||  | |||||||| ||| ||||||| ||||| |||||||| || ||||||||||||||||| |
------------------gtaaaatttctcctttcttcgt------------gtgtgctagctctttgatcgtttcgtgctcgaatcctc------acagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850727|gb|BJ608735.1|BJ608735
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67508420|gb|BJ941287.1|BJ941287
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162271595|gb|FC447480.1|FC447480
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18359423|gb|BJ191484.1|BJ191484
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67691638|gb|BJ951871.1|BJ951871
EST:     CGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: CGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162220891|gb|FC395868.1|FC395868
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162240732|gb|FC417455.1|FC417455
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18348919|gb|BJ180968.1|BJ180968
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18366229|gb|BJ198307.1|BJ198307
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162271594|gb|FC447479.1|FC447479
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|37821283|gb|BJ579349.1|BJ579349
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67573930|gb|BJ946754.1|BJ946754
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67703128|gb|BJ963361.1|BJ963361
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162224240|gb|FC400123.1|FC400123
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67716916|gb|BJ967175.1|BJ967175
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162220892|gb|FC395869.1|FC395869
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|100421478|gb|BY976206.1|BY976206
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|208358654|gb|DC942904.1|DC942904
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67697318|gb|BJ957551.1|BJ957551
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162230110|gb|FC406258.1|FC406258
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162236265|gb|FC411189.1|FC411189
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|208369432|gb|DC955893.1|DC955893
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162236264|gb|FC411188.1|FC411188
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67725434|gb|BJ975693.1|BJ975693
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67725793|gb|BJ976052.1|BJ976052
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67703454|gb|BJ963687.1|BJ963687
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18363436|gb|BJ195508.1|BJ195508
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162274512|gb|FC450955.1|FC450955
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67709343|gb|BJ965159.1|BJ965159
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCNGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAANAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18349129|gb|BJ181178.1|BJ181178
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162263395|gb|FC438618.1|FC438618
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|37852832|gb|BJ610840.1|BJ610840
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18369416|gb|BJ201503.1|BJ201503
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162230109|gb|FC406257.1|FC406257
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67709432|gb|BJ965248.1|BJ965248
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         AGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162276381|gb|FC452137.1|FC452137
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67575790|gb|BJ948614.1|BJ948614
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162242389|gb|FC416132.1|FC416132
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162275095|gb|FC450954.1|FC450954
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162276408|gb|FC452138.1|FC452138
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162263381|gb|FC438617.1|FC438617
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|19789326|gb|BQ041241.1|BQ041241
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162224241|gb|FC400124.1|FC400124
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67709479|gb|BJ965295.1|BJ965295
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         AGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|162212099|gb|FC388209.1|FC388209
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|18342188|gb|BJ174223.1|BJ174223
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|37836096|gb|BJ594104.1|BJ594104
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|67717277|gb|BJ967536.1|BJ967536
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|37846609|gb|BJ604617.1|BJ604617
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
EST: gi|37835885|gb|BJ593897.1|BJ593897
EST:     GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAG                         GGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT
genomic: GTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 38

TGTGCGCTGCTGGGAGTACAGACAACTACCCGGCATTGTACGTGTCACTCGTCCTTCTCGCCCTGACAAGGCTCGACGCCTGGGATACAAGGCGAAACAGgtatgttcaa ... tgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC
        agtatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaca