1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcgatgggtatgctcttactagattcgttaacatactttttgactttgtgccgatttagctagtatgactgactctaaggggctgctgttgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGTCCGCTACTGGGTTTCAATATGGTTACAAGATCATG
species | Physcomitrella patens |
transcript | PP1S79_61V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAG GATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGEST: gi|208392154|gb|DC949572.1|DC949572
genomic: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAGgtaaaagttc ... tgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAG
EST: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAG GATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGEST: gi|67693918|gb|BJ954151.1|BJ954151
genomic: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAGgtaaaagttc ... tgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAG
EST: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAG GATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGEST: gi|208365670|gb|DC935767.1|DC935767
genomic: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAGgtaaaagttc ... tgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAG
EST: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAG GATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAG
genomic: AGCTGTATGAAGGCACTTTGACCCGGAACATCGCTGGTGTCATTTACAAGgtaaaagttc ... tgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAG
tttgtgccgatttagctagtatgactgactctaaggggctgctgttgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGTCCGCTACTGGGTTTCAATATGGTTACAAGATCATG
gactgac putative branch site (score: 30)
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgatgggtatgctcttactagattcgttaacatactttttgactttgtgccgatttagctagtatgactgactctaaggggctgctgttgtattctagGATGAAAAGAAAATTATACAGACAGCCATCAAGCAATACCCTGTATTGAAGTCCGCTACTGGGTTTCAATATGGTTACAAGATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA