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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccttgacaatttggtgattggaaatctaggtgaatctatttttgcggtgaaggtagcatttaaatttgttttaattgcacttattttggtttggtgcagTTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG

Basic information

species Physcomitrella patens
transcript PP1S78_8V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167447|gb|FC343150.1|FC343150
EST:     GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAG                         TTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC
genomic: GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAGgtgggaaacg ... tttggtgcagTTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC
EST: gi|100397974|gb|BY954025.1|BY954025
EST:     GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAG                         TTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC
genomic: GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAGgtgggaaacg ... tttggtgcagTTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC
EST: gi|208390790|gb|DC938383.1|DC938383
EST:     GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAG                         TTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC
genomic: GTGCTGCAGCGGAGACCTACTGCTGTGATAAACCAAATCCTGCTTTACAGgtgggaaacg ... tttggtgcagTTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtgaaggtagcatttaaatttgttttaattgcacttattttggtttggtgcagTTATTTTATTTGAGCATTCTTGGCGGTTGCTATTTCACGCTAACGTGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG
                        ttttaat  putative branch site (score: 3)
             atttaaatttgtttta  TA-rich tract