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...tcacatcgtttgtttcgtcgttatgggttcaagtgaattcttgttgcagttctgacacgtgctgaacattctcaaaacctttctttttgtactgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGACAAAAATCATCTCTACATGCTTCAAGTG
species | Physcomitrella patens |
transcript | PP1S78_56V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|67573356|gb|BJ946180.1|BJ946180
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|208371650|gb|DC932479.1|DC932479
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|208360125|gb|DC939164.1|DC939164
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|100451962|gb|CJ975030.1|CJ975030
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|208354823|gb|DC934355.1|DC934355
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|67569974|gb|BJ942798.1|BJ942798
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|100363847|gb|BY966200.1|BY966200
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGEST: gi|67574997|gb|BJ947821.1|BJ947821
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
EST: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAG GTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
genomic: GTGCCTTCCTTCAATGGGCGTGTCGAACGTGCGGCTGATCTTTCCTCAAGgtatataatt ... actgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGG
gcagttctgacacgtgctgaacattctcaaaacctttctttttgtactgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGACAAAAATCATCTCTACATGCTTCAAGTG
tactgac putative branch site (score: 12)
cctttctttttgtact CT-rich tract
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacatcgtttgtttcgtcgttatgggttcaagtgaattcttgttgcagttctgacacgtgctgaacattctcaaaacctttctttttgtactgacccagGTTCACTCTCCAGTCTAAATCTCCAACGGTGCCCAAGAACTATTCCAGAGGACAAAAATCATCTCTACATGCTTCAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa