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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttactcattcccgtacttctgaacctcggttgtagcctgtctgaatgtttctgtatttgttttgtcatcaaattcagttcatatggttagtgttttgacgtttttctttcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGCGGTTCTCCGTGTGAGTTTGGGGAATTTTCTGTTTTTCTTAGCGTTTGC

Basic information

species Physcomitrella patens
transcript PP1S78_51V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223284|gb|FC400552.1|FC400552
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|100377096|gb|BY968361.1|BY968361
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|67569551|gb|BJ942375.1|BJ942375
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162159385|gb|FC335173.1|FC335173
EST:     GCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: GCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162259610|gb|FC436473.1|FC436473
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|208374347|gb|DC941160.1|DC941160
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|100447063|gb|CJ971362.1|CJ971362
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|208357565|gb|DC934073.1|DC934073
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162272333|gb|FC449011.1|FC449011
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|100366190|gb|BY967324.1|BY967324
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|18355465|gb|BJ187524.1|BJ187524
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|208350208|gb|DC901592.1|DC901592
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162190510|gb|FC365732.1|FC365732
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|100438163|gb|BY961685.1|BY961685
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|208389023|gb|DC937356.1|DC937356
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162173089|gb|FC349195.1|FC349195
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|18357289|gb|BJ189348.1|BJ189348
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACGAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|100416027|gb|BY957042.1|BY957042
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|18327728|gb|BJ159731.1|BJ159731
EST:     TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: gi|162276898|gb|FC452580.1|FC452580
EST:     TGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT                         GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatcaaattcagttcatatggttagtgttttgacgtttttctttcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGCGGTTCTCCGTGTGAGTTTGGGGAATTTTCTGTTTTTCTTAGCGTTTGC
                             ttttgac  putative branch site (score: 3)
                             ttttgacgtttttctt  CT-rich tract
                                     tttttcttt  TA-rich tract