1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaatgttcatctgcacctttcaatgtgccagaactatagttcaaatcctgccagatctctttatagatcttcatgtgtatgagacggctgacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
species | Physcomitrella patens |
transcript | PP1S77_163V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|18360619|gb|BJ192682.1|BJ192682
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|67569137|gb|BJ941961.1|BJ941961
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|18327068|gb|BJ159069.1|BJ159069
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|15327009|gb|BI487464.1|BI487464
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|162239910|gb|FC415749.1|FC415749
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: GCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|162214635|gb|FC390666.1|FC390666
genomic: GCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCGTCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|67692379|gb|BJ952612.1|BJ952612
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|100412337|gb|BY956532.1|BY956532
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|18335032|gb|BJ167050.1|BJ167050
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|100396568|gb|BY990190.1|BY990190
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|162253435|gb|FC430069.1|FC430069
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|162239911|gb|FC415750.1|FC415750
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAGEST: gi|208382112|gb|DC914787.1|DC914787
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
EST: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTG GTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
genomic: TCGAATGTCCAACTTCTCCAAAACCATCATCCCTTATCTGCAACGCCGTGgtatgtggtc ... gacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
atcctgccagatctctttatagatcttcatgtgtatgagacggctgacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
ggctgac putative branch site (score: 3)
tttatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgttcatctgcacctttcaatgtgccagaactatagttcaaatcctgccagatctctttatagatcttcatgtgtatgagacggctgacgtgacagGTGTGGTGGTCTGATGCAACCAAAGAATTGTTACCCGACTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA