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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattgtttgaatctcaaatcaagaggtttaacttgtttgtgcttttattcatttgaatcaccaagtacttgactcctggtacttgtgttttttgaacagCACATCAAGGCGATCATTACCGCAGACGAG

Basic information

species Physcomitrella patens
transcript PP1S76_98V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389679|gb|BY952485.1|BY952485
EST:     ATCCATCCACGATTCTGGGGCGTGAGCGGGCCATCGTGCTCAATCTTGAG                         CACATCAAGGCGATCATTACCGCAGACGAG
genomic: ATCCATCCACGATTCTGGGGCGTGAGCGGGCCATCGTGCTCAATCTTGAGgtgagaattg ... ttttgaacagCACATCAAGGCGATCATTACCGCAGACGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcatttgaatcaccaagtacttgactcctggtacttgtgttttttgaacagCACATCAAGGCGATCATTACCGCAGACGAG
                      acttgac  putative branch site (score: 4)
                                         tgtttttt  putative PPT
                                           ttttttgaa  TA-rich tract