1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggttcgaggcgcacttcggagtaacggttgagtttatggcttcaagattgcgagacacagccatgacacaactgacccttccctgttccgtgtctgcagGGAAAAGCTGCCGACTCCGGTGGTTCAATCAGCTGGACCCTCGCATTAACCGGCGCCCGTTCACGGAGGAAGAGGAGGACCGACTTCTATCAGCACACCG
species | Physcomitrella patens |
transcript | PP1S76_66V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
agattgcgagacacagccatgacacaactgacccttccctgttccgtgtctgcagGGAAAAGCTGCCGACTCCGGTGGTTCAATCAGCTGGACCCTCGCATTAACCGGCGCCCGTTCACGGAGGAAGAGGAGGACCGACTTCTATCAGCACACCG
aactgac putative branch site (score: 3)
cccttccctgttccgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggttcgaggcgcacttcggagtaacggttgagtttatggcttcaagattgcgagacacagccatgacacaactgacccttccctgttccgtgtctgcagGGAAAAGCTGCCGACTCCGGTGGTTCAATCAGCTGGACCCTCGCATTAACCGGCGCCCGTTCACGGAGGAAGAGGAGGACCGACTTCTATCAGCACACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA