Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67698417|gb|BJ958650.1|BJ958650EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
EST:
gi|67574984|gb|BJ947808.1|BJ947808EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTTCATTTGCCTTCA
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTT-CATTTGCCTTCA
EST:
gi|67574664|gb|BJ947488.1|BJ947488EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
EST:
gi|37851568|gb|BJ609576.1|BJ609576EST: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAG GAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
genomic: CGCAATTCATCACACTTAAACGCTTTAGAAGCTGGGAATGCATCGTAGAGgtaagttttt ... tgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaactcgagacactagtggcttagaatttagagattgtttttatgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGTGAAGAACAAGAGCAGTCAACTTCACTTCACATTTTGCTGAGAAAATAA
acttaat putative branch site (score: 4)
tttttat putative PPT
attgtttttatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttttattaaaagaatgtttattgctttgaagtagtgtacgaggtatttgggagggttgactagggtgatttagatatgatcatgactgacttaatgaactcgagacactagtggcttagaatttagagattgtttttatgttttacagGAGGAATGGTCTGAAGACATCCACGTTATGCCGATGTTCATTTGCCTTCAGTGAAGAACAAGAGCAGTCAACTTCACTTCACATTTTGCTGAGAAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG