Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162257794|gb|FC433992.1|FC433992EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST:
gi|100398256|gb|BY954167.1|BY954167EST: GATATGTTAGCTGAGAAAACAAATCAGGCTTCAGATTATGCCGGACAAAC TTACAAAGCTGCAAAAGACA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACA
EST:
gi|100372642|gb|BY948633.1|BY948633EST: TATGTTAGCTGAGAAAACNNAATCA-GCTTCAGATTTATGCCGGACAA-C TTTAC-AAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTG
genomic: TATGTTAGCTGAGAAAACA-AATCAAGCTTCAGATT-ATGCCGGACAAACgtaatttctt ... gttggtgtagTT-ACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTG
EST:
gi|162274518|gb|FC450961.1|FC450961EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST:
gi|162256247|gb|FC432303.1|FC432303EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST:
gi|162266870|gb|FC442997.1|FC442997EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST:
gi|100448152|gb|CJ972451.1|CJ972451EST: GATATGTTAGCTGAGAAAACAA-TCANGCTTCAGATTATGCCGGACAA-C TNACNA-GCTGCAAA-GACACGGTCATGGAC
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGAC
EST:
gi|162255767|gb|FC431427.1|FC431427EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttccaatttaccttggcatctgactattcatgttgttgtgttcggttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAACAAACTGGGCAAGCATGGGAAGGAACAAAACAGACTTCCGCGGATTAT
atctgac putative branch site (score: 3)
aattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttcttcttggctttagttatcttaatgtatattgaaatgcattttattcagcttcacttgactaaaacttccaatttaccttggcatctgactattcatgttgttgtgttcggttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAACAAACTGGGCAAGCATGGGAAGGAACAAAACAGACTTCCGCGGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA