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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgactgttcggacctattccctacagtcacgatctcagttccatcagtgacactcaccattctaacaaagctgttctttcgtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGACCCCGATATGGCTGTGCATTCCTGATTATGATAATTTCGCCAGCCGTGTA

Basic information

species Physcomitrella patens
transcript PP1S75_75V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385252|gb|BY950844.1|BY950844
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGNTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100391857|gb|BY989582.1|BY989582
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100368601|gb|BY967087.1|BY967087
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GNTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100351968|gb|BY964638.1|BY964638
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100411132|gb|BY956337.1|BY956337
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100354570|gb|BY983455.1|BY983455
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100391464|gb|BY971670.1|BY971670
EST:     AATTTGNAC-AAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: AATTTG-ACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|208363881|gb|DC943338.1|DC943338
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGAC
EST: gi|100441883|gb|BY981106.1|BY981106
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GGTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGGGCGACG-GGTTGGGA
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGG-A
EST: gi|100395894|gb|BY972180.1|BY972180
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGAACC
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACC
EST: gi|100353584|gb|BY964880.1|BY964880
EST:     GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTG                         GTTCTATCCTGTCTCGTCTGCTGATGGGGACCGTGTGCGACGTGGTTGGGA
genomic: GAATTTGACCAAAACCGACGTTGGACATGCTGCCATCGCCTCAGTATCTGgcaagtgact ... gtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGG-A


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttccatcagtgacactcaccattctaacaaagctgttctttcgtatatgcagGTTCTATCCTGTCTCGTCTGCTGATGGGAACCGTGTGCGACGTGGTTGGACCCCGATATGGCTGTGCATTCCTGATTATGATAATTTCGCCAGCCGTGTA
                        ttctaac  putative branch site (score: 1)
                                      ttctttcgt  putative PPT
                       attctaa  TA-rich tract