Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgcgtggagttggtcattttaggctttagtgtttgttcgggtcgatatcgaagtgggactgtcattatacgtaactccgtcttctctattcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG

Basic information

species Physcomitrella patens
transcript PP1S74_73V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 2
tctgcgtggagttggtcat-tttaggctttagtgtttgttcgggtcgatatcgaagtgggactgtcattatacgtaact--ccgtcttctctattcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG
   ||  ||||  | |||   | | |   | | |      |  |  |     |      |||| |  |     ||   |   |||    |   |      |||| ||| | || || ||| | ||||| || |||||||| |||||||||||||| ||||| |||||||||
---gctcggaggcgctcacgctcatggactggcgaccaggccagctgcagctgtgtaatgactattttaccgagttgttgatcgttggatgcttcttgcgcagGCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18333530|gb|BJ165545.1|BJ165545
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162240633|gb|FC419371.1|FC419371
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|6166933|gb|AW145197.1|AW145197
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|19778932|gb|BQ039383.1|BQ039383
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|7583124|gb|AW699288.1|AW699288
EST:     TCACAAGGTGACGCANTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162253144|gb|FC428976.1|FC428976
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162226401|gb|FC403317.1|FC403317
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|7286483|gb|AW598970.1|AW598970
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162247250|gb|FC421397.1|FC421397
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|7648293|gb|AW739276.1|AW739276
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|37837319|gb|BJ595327.1|BJ595327
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|7286770|gb|AW599257.1|AW599257
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162238602|gb|FC418978.1|FC418978
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162237489|gb|FC412987.1|FC412987
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|37853211|gb|BJ611219.1|BJ611219
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGNTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162207222|gb|FC382544.1|FC382544
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162237488|gb|FC412986.1|FC412986
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162227433|gb|FC403167.1|FC403167
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162251686|gb|FC426092.1|FC426092
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162215763|gb|FC390828.1|FC390828
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|15262193|gb|BI437503.1|BI437503
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162238601|gb|FC418977.1|FC418977
EST:     TCCCAAGGTGACGCAGTCCAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162242300|gb|FC418877.1|FC418877
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|19790859|gb|BQ042093.1|BQ042093
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|18325570|gb|BJ157567.1|BJ157567
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162253143|gb|FC428975.1|FC428975
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162243013|gb|FC417861.1|FC417861
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|67575708|gb|BJ948532.1|BJ948532
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162201010|gb|FC378141.1|FC378141
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162234136|gb|FC410350.1|FC410350
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162217327|gb|FC392795.1|FC392795
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|15327129|gb|BI487613.1|BI487613
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162204495|gb|FC380800.1|FC380800
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162218149|gb|FC394986.1|FC394986
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|18357955|gb|BJ190014.1|BJ190014
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|67699190|gb|BJ959423.1|BJ959423
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162233666|gb|FC409425.1|FC409425
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|162215762|gb|FC390827.1|FC390827
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
EST: gi|18359810|gb|BJ191871.1|BJ191871
EST:     TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAG                         GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC
genomic: TCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 113

AAGACCAAGAAGTCCTTCTGCCCGGGGAAGGCATGTAAGAAGCATACCCTTCACAAGGTGACGCAGTACAAGAAGGGAAAGGACAGCTTGTACGCCCAAGgtattttggc ... ttcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatcgaagtgggactgtcattatacgtaactccgtcttctctattcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG
                         acgtaac  putative branch site (score: 113)
                               ctccgtcttctctatt  CT-rich tract
                  tcattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgcgtggagttggtcattttaggctttagtgtttgttcgggtcgatatcgaagtgggactgtcattatacgtaactccgtcttctctattcgtgacagGGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG