1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tctgagtaaatgtgaaggttaggtttaaaatattcaatttctgaacttttgtgcaaaaacgtttttggtaactatctaatttagcacttgtttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGAGGAGAAAGCCGCTCTACTTGAAGCTGGTCTTCCTATAAGTGGAACTGGT
species | Physcomitrella patens |
transcript | PP1S74_21V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGT ACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGAEST: gi|100439772|gb|BY962100.1|BY962100
genomic: ATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGTgtaagttcca ... tttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGA
EST: CTATAAGAAACATCCACCTCTGATCAAAGT ACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGAEST: gi|100419441|gb|BY957576.1|BY957576
genomic: CTATAAGAAACATCCACCTCTGATCAAAGTgtaagttcca ... tttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGA
EST: ATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGT ACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGA
genomic: ATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGTgtaagttcca ... tttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGA
cttttgtgcaaaaacgtttttggtaactatctaatttagcacttgtttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGAGGAGAAAGCCGCTCTACTTGAAGCTGGTCTTCCTATAAGTGGAACTGGT
cttgttt CT-rich tract
taactatctaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgagtaaatgtgaaggttaggtttaaaatattcaatttctgaacttttgtgcaaaaacgtttttggtaactatctaatttagcacttgtttgtcaaagACATGATGACATAAAACTGGAGGTGTTGAAAGATGGATCCTCCAAAGATGAGGAGAAAGCCGCTCTACTTGAAGCTGGTCTTCCTATAAGTGGAACTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA