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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatttcttcatgcaagcgctagaatggagatgaataaatgtgagttgacgtaagcatcggatactttgtttgctaatgtggatgtcttcggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162985|gb|FC338167.1|FC338167
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     GGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCCATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTANAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18330051|gb|BJ162057.1|BJ162057
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67704109|gb|BJ964342.1|BJ964342
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18326813|gb|BJ158813.1|BJ158813
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18363954|gb|BJ196027.1|BJ196027
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18361231|gb|BJ193296.1|BJ193296
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18373465|gb|BJ205043.1|BJ205043
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCNTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67703978|gb|BJ964211.1|BJ964211
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18361452|gb|BJ193518.1|BJ193518
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18363048|gb|BJ195120.1|BJ195120
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67702174|gb|BJ962407.1|BJ962407
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|18373978|gb|BJ205556.1|BJ205556
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     GCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAANGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100366155|gb|BY967307.1|BY967307
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|67702385|gb|BJ962618.1|BJ962618
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     GGGCTGACGCTAAACAACGCCATTCTTGCTGAGGACAAGCACCTTCCCAT                         GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
genomic: GGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 27 (downstream exon)
Score: 11

GTACGGGCTGACGCTAAACAACGCTATTCTTGCTGAGGACAAGCACCTTCCCATgtatgttaaa ... ggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacgtaagcatcggatactttgtttgctaatgtggatgtcttcggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG
                          tgctaat  putative branch site (score: 11)
                atacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatttcttcatgcaagcgctagaatggagatgaataaatgtgagttgacgtaagcatcggatactttgtttgctaatgtggatgtcttcggcattgcagGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA