1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...taataggatatcaactgcttaagattattgcgatttcgcttgcttttgctactctttcttcccaatttgttacattgtgggacttgctaacatacaacagGGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATGACTACCGAGGAGCTGCACACGACAATTCGAGG
species | Physcomitrella patens |
transcript | PP1S73_244V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCGAAGAAGAAGACTTTTCCAGCCATTTTCAACCTTTACACGCAG GGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATGEST: gi|100445006|gb|BY982833.1|BY982833
genomic: ATCTTGCGAAGAAGAAGACTTTTCCAGCCATTTTCAACCTTTACACGCAGgtacaatgtt ... catacaacagGGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATG
EST: ATCTTGCGAAGAAGAAGACTTTTCCAGCCATTTTCAACCTTTACACGCAG GGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATG
genomic: ATCTTGCGAAGAAGAAGACTTTTCCAGCCATTTTCAACCTTTACACGCAGgtacaatgtt ... catacaacagGGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATG
ttgctactctttcttcccaatttgttacattgtgggacttgctaacatacaacagGGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATGACTACCGAGGAGCTGCACACGACAATTCGAGG
tgctaac putative branch site (score: 1)
aatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataggatatcaactgcttaagattattgcgatttcgcttgcttttgctactctttcttcccaatttgttacattgtgggacttgctaacatacaacagGGCTTCTTGCCGGACGAATTGAAAATTATTGGGTATTCGAGGTCTAAAATGACTACCGAGGAGCTGCACACGACAATTCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC