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...ctgattattattctagcgagctgccatctaactgtcgaatagtcgtctttggtgacaattgattgacgagcaacgtcttgtgtatcttttggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTTCAAG
species | Physcomitrella patens |
transcript | PP1S73_243V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|162160113|gb|FC335983.1|FC335983
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|100377934|gb|BY949596.1|BY949596
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|100377934|gb|BY949596.1|BY949596
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|67569708|gb|BJ942532.1|BJ942532
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|67569708|gb|BJ942532.1|BJ942532
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|18363907|gb|BJ195979.1|BJ195979
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|18363907|gb|BJ195979.1|BJ195979
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|100449469|gb|CJ973768.1|CJ973768
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|100449469|gb|CJ973768.1|CJ973768
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAAAEST: gi|208344624|gb|DC912570.1|DC912570
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTT--Agtaagtgtgg ... ggtgcagaa
EST: CGAAGTCGGTGCTGGAGCCTTAAAG GACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTEST: gi|208344624|gb|DC912570.1|DC912570
genomic: CGAAGTCGGTGCTAGAGCCTT--A-gtaagtgtgg ... ggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCT
EST: CGAAGTCGGTGCTGGAGCCTTAAAG GACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTEST: gi|67571422|gb|BJ944246.1|BJ944246
genomic: CGAAGTCGGTGCTAGAGCCTT--A-gtaagtgtgg ... ggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCT
EST: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTA GACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTT
genomic: TGGCAGGACTTTCTGGGGCCGTGTCTTTCGAAGTCGGTGCTAGAGCCTTAgtaagtgtgg ... ggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTT
tctttggtgacaattgattgacgagcaacgtcttgtgtatcttttggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTTCAAG
gattgac putative branch site (score: 15)
tcttttg putative PPT
aattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgattattattctagcgagctgccatctaactgtcgaatagtcgtctttggtgacaattgattgacgagcaacgtcttgtgtatcttttggtgcagaagGACGCGAGAATGTCTGCCATGGATATGTCTTCCTTATCAGGCTGCAGTCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG