1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtgtcgtagataccttgattgtcagtagattttgagcataagtcgttctctttagtattgaatggacttggctaactaaactcatggcatatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACCCCGAGAATTTTGAGACCCCAGGAGTGGAGGTGACCACCGGCCCTCTTG
species | Physcomitrella patens |
transcript | PP1S72_25V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGACAGTGTCACG ACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACEST: gi|100397837|gb|BY990426.1|BY990426
genomic: CGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACAC
EST: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACG ACTGAGGACTTAAAGCAATTTATGCAGTGGGGCAGCAAGACGCCTGGACACEST: gi|100447682|gb|CJ971981.1|CJ971981
genomic: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACAC
EST: GTATGCTCCANTATGCCCTTCTTCACCTGGCANGATACGACAGTGTCACG ACTGAGGACTTAAAGCAATTTAEST: gi|67716179|gb|BJ966439.1|BJ966439
genomic: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAGCAATTTA
EST: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACG ACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACEST: gi|162255769|gb|FC431429.1|FC431429
genomic: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACAC
EST: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACG ACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACEST: gi|100390522|gb|BY952930.1|BY952930
genomic: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACAC
EST: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACG ACTGAGGACTTAAAGNCA-TTTAGGCAGTGNGGCAGCAAGACGCCTGGACA
genomic: GTATGCTCCAGTATGCCCTTCTTCACCTGGCAGGATACGACAGTGTCACGgtatgtctct ... atatttgcagACTGAGGACTTAAAG-CAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACA
cgttctctttagtattgaatggacttggctaactaaactcatggcatatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACCCCGAGAATTTTGAGACCCCAGGAGTGGAGGTGACCACCGGCCCTCTTG
aactaaa putative branch site (score: 172)
tttagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgtcgtagataccttgattgtcagtagattttgagcataagtcgttctctttagtattgaatggacttggctaactaaactcatggcatatttgcagACTGAGGACTTAAAGCAATTTAGGCAGTGGGGCAGCAAGACGCCTGGACACCCCGAGAATTTTGAGACCCCAGGAGTGGAGGTGACCACCGGCCCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG