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gtaagtctacatggtttcggcgtagattttaagtgtcttgttgtttgcaaaatggatacgaaaagctgattcatgtcgttcgagaatgacttcagttgtttgaaatggccctgcatttcttgcagtaaaggcctgacgattacctgtttctttaccagAACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAAGAAGTTTGTGTGCTGTTCGGAGAATTCATGCCTCGGCGACAAGACGCGC
species | Physcomitrella patens |
transcript | PP1S70_166V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCAGCGTGGTTTAAGCATACGAAGACCTGGAATTCCTACTGCAATTTC AACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAAEST: gi|67572708|gb|BJ945532.1|BJ945532
genomic: CATCAGCGTGGTTTAAGCATACGAAGACCTGGAATTCCTACTGCAATTTCgtaagtctac ... tctttaccagAACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAA
EST: CATCAGCGTGGTTTAAGCATACGAAGACCTGGAATTCCTACTGCAATTTC AACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAA
genomic: CATCAGCGTGGTTTAAGCATACGAAGACCTGGAATTCCTACTGCAATTTCgtaagtctac ... tctttaccagAACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAA
aatggccctgcatttcttgcagtaaaggcctgacgattacctgtttctttaccagAACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAAGAAGTTTGTGTGCTGTTCGGAGAATTCATGCCTCGGCGACAAGACGCGC
gcctgac putative branch site (score: 7)
ttacctgtttcttt putative PPT
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctacatggtttcggcgtagattttaagtgtcttgttgtttgcaaaatggatacgaaaagctgattcatgtcgttcgagaatgacttcagttgtttgaaatggccctgcatttcttgcagtaaaggcctgacgattacctgtttctttaccagAACTGTCCAAGGAAGGCATTTCGAAACACCTGGAAAGAGTGCTCTTCACAAGAAGTTTGTGTGCTGTTCGGAGAATTCATGCCTCGGCGACAAGACGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA