1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttagatcttgtgctcgtcacgtaggaaaggctgttactgctgataacgaacttcaggtgtaaaccacgaattcctaacactttgtttgtgtaatgcagTGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT
species | Physcomitrella patens |
transcript | PP1S6_51V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTTGCAATGGTGGGGAATAGATTCCAGCCATGCAGGCTACTCCTTGCAG TGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTEST: gi|162275966|gb|FC452034.1|FC452034
genomic: GTTTGCAATGGTGGGGAATAGATTCCAGCCATGCAGGCTACTCCTTGCAGgttagtgatg ... tgtaatgcagTGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCT
EST: GTTTGCAATGGTGGGGAATAGATTCCAGCCATGCAGGCTACTCCTTGCAG TGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCT
genomic: GTTTGCAATGGTGGGGAATAGATTCCAGCCATGCAGGCTACTCCTTGCAGgttagtgatg ... tgtaatgcagTGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCT
taacgaacttcaggtgtaaaccacgaattcctaacactttgtttgtgtaatgcagTGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT
tcctaac putative branch site (score: 1)
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagatcttgtgctcgtcacgtaggaaaggctgttactgctgataacgaacttcaggtgtaaaccacgaattcctaacactttgtttgtgtaatgcagTGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA